Selected further reading  

If you have a publication that should appear here, please let us know.

Sponges, volume and surface area

Abdo, D. A., Seager, J. W., Harvey, E. S., McDonald, J. I., Kendrick, G. A., and Shortis, M. R., 2006. Efficiently measuring complex sessile epibenthic organisms using a novel photogrammetric technique. JEMBE. Vol 339/1, pp. 120 - 133.

Koopmans, M., and Wijffels, R., 2008. Seasonal Growth Rate of the Sponge Haliclona oculata (Demospongiae: Haplosclerida). Mar Biotechnol, 10(5): 502-510.


Abdo DA, Bellchambers LM, Evans SN, 2012. Turning up the Heat: Increasing Temperature and Coral Bleaching at the High Latitude Coral Reefs of the Houtman Abrolhos Islands. PLoS ONE 7(8): e43878. DOI:10.1371/journal.pone.0043878.

Shortis, M. R., Seager, J. W., Williams, A., Barker, B. A. and Sherlock, M., 2009. Using stereo-video for deep water benthic habitat surveys. Marine Technology Society Journal, 42(4): 28-37.

3D Fish measurement

Bower, Michael R., Gaines, Daniel B., Wilson, Kevin P., Wullschleger, John G., Dzul, Maria C., Quist, Michael C. and Dinsmore, Stephen J., 2011. Accuracy and Precision of Visual Estimates and Photogrammetric Measurements of the Length of a Small-bodied Fish. North American Journal of Fisheries Management, 31(1): 138-143.

Dorman SR, Harvey ES, Newman SJ, 2012. Bait Effects in Sampling Coral Reef Fish Assemblages with Stereo-BRUVs. PLoS ONE 7(7): e41538. DOI:10.1371/journal.pone.0041538.

Harasti, D. and Malcolm, H., 2013. Distribution, relative abundance and size composition of the threatened serranid Epinephelus daemelii in New South Wales, Australia. Journal of Fish Biology. doi: 10.1111/jfb.12179.

J. S. Goetze, T. J. Langlois, D. P. Egli, E. S. Harvey, 2011. Evidence of artisanal fishing impacts and depth refuge in assemblages of Fijian reef fish. Coral Reefs 30(2): 507-517.

J. Hardingea, E. S. Harvey, B. J. Saunders, and S. J. Newman, 2013. A little bait goes a long way: The influence of bait quantity on a temperate fish assemblage sampled using stereo-BRUVs.
Journal of Experimental Marine Biology and Ecology, 449 (2013) 250-260.

T. J. Langlois, E. S. Harvey, B. Fitzpatrick, J. J. Meeuwig, G. Shedrawi, D. L. Watson, 2010. Cost-efficient sampling of fish assemblages: comparison of baited video stations and diver video transects. Aquat Biol 9: 155-168.

Lindfield SJ, McIlwain JL, Harvey ES (2014) Depth Refuge and the Impacts of SCUBA Spearfishing on Coral Reef Fishes. PLoS ONE 9(3): e92628. doi:10.1371/journal.pone.0092628.

Lindfield, S. J., Harvey, E. S., McIlwain, J. L., Halford, A. R. (2014), Silent fish surveys: bubble-free diving highlights inaccuracies associated with SCUBA-based surveys in heavily fished areas. Methods in Ecology and Evolution. doi: 10.1111/2041-210X.12262.

Malcolm HA, Schultz AL, Sachs P, Johnstone N, Jordan A (2015) Decadal Changes in the Abundance and Length of Snapper (Chrysophrysauratus) in Subtropical Marine Sanctuaries. PLoSONE 10(6): e0127616. doi:10.1371/journal.pone.0127616.

K. Phillips, V. Boero Rodriguez, E. Harvey, D. Ellis, J. Seager, G. Begg, J. Hender, 2009. Assessing the operational feasibility of stereo-video and evaluating monitoring options for the Southern Bluefin Tuna Fishery ranch sector. Fisheries Research and Development Corporation report 2008/44, ISBN 978-1-921192-32-6, 46pp.

Pritchard K, Edmunds M, Stewart K and Davis S, 2011. Victorian Subtidal Reef Monitoring Program: the reef biota at Bunurong Marine National Park. Parks Victoria Technical Series No. 69. Parks Victoria, Melbourne.

Julia Santana-Garcon, Jeffrey M. Leis, Stephen J. Newman, and Euan S. Harvey, 2013. Presettlement schooling behaviour of a priacanthid, the Purplespotted Bigeye Priacanthus tayenus (Priacanthidae: Teleostei). Environ Biol Fish, DOI: 10.1007/s10641-013-0150-6.

Jan Seiler, Alan Williams, Neville Barrett, 2012. Assessing size, abundance and habitat preferences of the Ocean Perch Helicolenus percoides using a AUV-borne stereo camera system. Fisheries Research 129-130: 64-72.

Timothy M. Smith, Gregory P. Jenkins, Neil Hutchinson, 2012. Seagrass edge effects on fish assemblages in deep and shallow habitats. Estuarine, Coastal and Shelf Science 115(10): 291-299.

Taylor B. M., 2014. Drivers of protogynous sex change differ across spatial scales. Proc. R. Soc. B 281: 20132423.

Dianne L. Watson, Marti J. Anderson, Gary A. Kendrick, Kim Nardi, Euan S. Harvey, 2009. Effects of protection from fishing on the lengths of targeted and non-targeted fish species at the Houtman Abrolhos Islands, Western Australia. Mar Ecol Prog Ser, 384: 241-249.

Zintzen V, Anderson MJ, Roberts CD, Harvey ES, Stewart AL, et al., 2012. Diversity and Composition of Demersal Fishes along a Depth Gradient Assessed by Baited Remote Underwater Stereo-Video. PLoS ONE 7(10): e48522. DOI:10.1371/journal.pone.0048522.

Other marine monitoring

Hammar L, Andersson S, Eggertsen L, Haglund J, Gullström M, et al. (2013) Hydrokinetic Turbine Effects on Fish Swimming Behaviour. PLoSONE 8(12): e84141. doi:10.1371/journal.pone.0084141.

Vanessa F. Jaiteh, Simon J. Allen, Jessica J. Meeuwig, Neil R. Loneragan, 2012. Subsurface behavior of bottlenose dolphins (Tursiops truncatus) interacting with fish trawl nets in northwestern Australia: Implications for bycatch mitigation. DOI: 10.1111/j.1748-7692.2012.00620.x.

Schultz AL, Malcolm HA, Bucher DJ, Smith SDA, (2012). Effects of Reef Proximity on the Structure of Fish Assemblages of Unconsolidated Substrata. PLoS ONE 7(11): e49437. DOI:10.1371/journal.pone.0049437.

Smith KR, Scarpaci C, Louden BM, Otway NM, (2015). Behaviour of aggregated grey nurse sharks Carcharias taurus off eastern Australia: similarities and differences among life-history stages and sites. Endang Species Res, doi: 10.3354/esr00652.

Acoustic applications

Rokas Kubilius, Lucio Calise, Egil Ona, 2012. Northern krill swimming orientation as measured by stereo camera. In "Micro-acoustics in marine and medical research", Eds Spiros Kotopoulis, Anthony Delalande, Olav Rune Godø, Michiel Postema. pp. 7-14. (187p). ISBN: 978-82-303-1945-1.

Kubilius, R., Ona, E., and Calise, L. Measuring in situ krill tilt orientation by stereo photogrammetry: examples for Euphausia superba and Meganyctiphanes norvegica. – ICES Journal of Marine Science, doi: 10.1093/icesjms/fsv077.

Ryan, T. E., Kloser, R. J., and Macaulay, G. J. 2009. Measurement and visual verification of fish target strength using an acoustic-optical system attached to a trawlnet. ICES Journal of Marine Science, 66: 1238-1244.


Boutros, N., Shortis, M. R. and Harvey, E. S. 2015. A comparison of calibration methods and system configurations of underwater stereo-video systems for applications in marine ecology. Limnology and Oceanography: Methods, 13: 224–236. doi: 10.1002/lom3.10020.

Last updated 22nd January 2016   SeaGIS homepage
Copyright © 2006-2016